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Uses individual level genetic and exposure data to generate covariance matrices for estimated effects of individual genetic variants on each exposure. The function returns a number of covariance matrices equal to the number of SNPs, where SNP and row numbers reference ordered exposures.

Usage

snpcov_mvmr(Gs, Xs)

Arguments

Gs

A matrix or dataframe containing genetic instrument measures. Columns should indicate genetic variant number, with rows representing an observed measure of the genetic variant.

Xs

A matrix or dataframe containing exposure measures. Columns should indicate exposure number, with rows representing an observed measure for the given exposure.

Value

A list of covariance matrices with respect to each genetic variant, retaining the ordering in Gs

References

Sanderson, E., et al., An examination of multivariable Mendelian randomization in the single-sample and two-sample summary data settings. International Journal of Epidemiology, 2019, 48, 3, 713-727. doi:10.1093/ije/dyy262

Author

Wes Spiller; Eleanor Sanderson; Jack Bowden.

Examples

if (FALSE) { # \dontrun{
snpcov_mvmr(data[,1:10], data[,11:13])
} # }